1) Jinghao Yu and Zhengyu Zong, Torus knots in lens spaces, open Gromov-Witten invariants, and topological recursion, Accepted by SCIENCE CHINA: Mathematics.
2) Song Yu and Zhengyu Zong, Open WDVV equations and Frobenius structures for toric Calabi-Yau 3-folds, Forum of Mathematics, Sigma (2025), 13, e76, 1–29.
3) Zijun Zhou and Zhengyu Zong, Gromov--Witten theory of [C2/Zn+1]×P1, Algebra & Number Theory, Volume 16, 2022, No.1, 1-58
4) Bohan Fang, Chiu-Chu Melissa Liu and Zhengyu Zong, On the Remodeling Conjecture For Toric Calabi-Yau 3-orbifolds, Journal of American Mathematical Society, 33 (2020), no. 1, 135-222.
5) Bohan Fang, Chiu-Chu Melissa Liu and Zhengyu Zong, All Genus Open-Closed Mirror Symmetry for Affine Toric Calabi-Yau 3-Orbifolds, Algebraic Geometry, 7 (2020), no. 2, 192-239.
6) Bohan Fang and Zhengyu Zong, Topological recursion for the conifold transition of a torus knot, Selecta Mathematica 25, no.3 (2019).
7) Bohan Fang and Zhengyu Zong, graph sums in the remodeling conjecture, Proceedings of Symposia in Pure Mathematics 100 (2018), 359-403.
8) Bohan Fang, Chiu-Chu Melissa Liu and Zhengyu Zong, The Eynard-Orantin Recursion and Equivariant Mirror Symmetry for the Projective Line, Geometry & Topology 21,no.4 (2017), 2049-2092.
9) Bohan Fang, Chiu-Chu Melissa Liu and Zhengyu Zong, The SYZ mirror symmetry and the BKMP remodeling conjecture, Advances in Theoretical and Mathematical Physics, 20, no. 1 (2016), 165-192.
10) Bohan Fang, Chiu-Chu Melissa Liu and Zhengyu Zong, All genus mirror symmetry for toric Calabi-Yau 3-orbifolds, Proceedings of Symposia in Pure Mathematics 93 (2016), 1-19.
11) Bohan Fang, Chiu-Chu Melissa Liu and Zhengyu Zong, Equivariant Gromov-Witten Theory of Affine Smooth Toric Deligne-Mumford Stacks, International Mathematics Research Notices, 2016, no. 7, 2127-2144.
12) Dustin Ross and Zhengyu Zong, Cyclic Hodge Integrals and Loop Schur Functions, Advances in Mathematics 285 (2015), 1448-1486.
13) Zhengyu Zong, Generalized Mariño-Vafa formula and Local Gromov-Witten Theory of Orbi-curves, Journal of Differential Geometry 100 (2015), no. 1, 161-190.
14) Dustin Ross and Zhengyu Zong, The Gerby Gopakumar-Mariño-Vafa Formula, Geometry & Topology, 17 (2013) 2935–2976.
15) Bohan Fang, Chiu-Chu Melissa Liu and Zhengyu Zong, Remodeling Conjecture with Descendants, arXiv: 2504.15696
16) Zhuoming Lan and Zhengyu Zong, Twisted Equivariant Gromov-Witten Theory of the Classifying Space of a Finite Group, arXiv:2309.01473.
17) Zhengyu Zong, Equivariant Gromov-Witten Theory of GKM Orbifolds, arXiv:1604.07270.
18) Zhengyu Zong, A Formula of the One-leg Orbifold Gromov-Witten Vertex and Gromov-Witten Invariants of the Local BZ_m Gerbe, arXiv:1204.1753.